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SubscribeCompGen Team Develops Faster Algorithms to Analyze Genomic Associations
The genome-wide association study (GWAS) has great potential to facilitate the identification of genomic loci underlying phenotypic variability and disease susceptibility. Although successful in elucidating the genomic sources of a wide range of agronomically important traits and human diseases, the statistical approaches employed in a typical GWAS assume a potentially over simplistic model of the relationship between genes and traits. (more…)
CompGen Team Builds Ancestral Trees to Determine Disease-Causing Genetic Variants
Many of our most widespread diseases, such as diabetes, cancer, cardiovascular disease, and mental illness, are associated with variants in our genes. How do these variants in our genomes carry across generations, and how do they ultimately affect our health? University of Illinois researchers are trying to unlock the mystery. (more…)
Illinois CompGen and Harvard T. H. Chan School of Public Health join forces for a detailed review of Isaac, Illumina’s variant calling workflow
The pace of implementing personalized medicine is increasing. Genomics facilities across the country will likely face the challenge of sequencing hundreds of individual genomes per day in the near future. (more…)
Expanding the Biology Toolkit with Computing Power for Genomics
Genomics research is undergoing a paradigm shift thanks to the development of a myriad of new high-throughput systems for massive data acquisition. (more…)
Meet the 2015–2016 CompGen Fellows
The CompGen Fellowship program awards predoctoral fellowships, funded by the NSF and the University of Illinois, to promote interdisciplinary research in computational genomics. (more…)
Research by the Numbers: The Power of Data to Transform Individualized Medicine
Crunching billions of data points requires high-performance computers and people who can run them—like Arjun Athreya. (more…)
White House: Advancing U.S. Leadership in High-Performance Computing
In July, President Obama issued an Executive Order establishing the National Strategic Computing Initiative (NSCI) to ensure the United States continues leading in this field over the coming decades. (more…)
Genomic Data May Soon Outpace YouTube and Twitter Data, Say CompGen Researchers
The growing field of genomics may produce more data in 10 years than huge services like YouTube and Twitter, according to a team of scientists. In a paper published in the open-access journal PLOS Biology, CompGen Fellow Zachary Stephens of the University of Illinois at Urbana-Champaign and others argue that as the ability to map genomes gets easier and faster, the amount and variety of data produced will exceed the ability to handle it. (more…)
Meet the Spring 2015 NCSA-CompGen Fellows
The CompGen Fellowship program awards predoctoral fellowships, funded by the NSF and the University of Illinois, to promote interdisciplinary research in computational genomics. (more…)
CompGen Researchers: Different Species Share A “Genetic Toolkit” for Behavioral Traits
CHAMPAIGN, Ill. — The house mouse, stickleback fish and honey bee appear to have little in common, but at the genetic level these creatures respond in strikingly similar ways to danger, researchers report. When any of these animals confronts an intruder, the researchers found, many of the same genes and brain gene networks gear up or down in response.
This discovery, reported in the Proceedings of the National Academy of Sciences, suggests that distantly related organisms share some key genetic mechanisms that help them respond to threats, said University of Illinois cell and developmental biology professor Lisa Stubbs, who led the research with animal biology professor Alison Bell and entomology professor and Carl R. Woese Institute for Genomic Biology director Gene Robinson. Bell and Stubbs also are IGB faculty. (more…)